| Filename | Total | Flagged As Poor Quality | Sequence Length | %GC |
|---|---|---|---|---|
| 179_F_CB2YGANXX_ATCACG_L001_R1.fastq.gz | 44,234,394 | 0 | 50-100 | 50 |
| 187_F_CB2YGANXX_CGATGT_L001_R1.fastq.gz | 44,761,237 | 0 | 50-100 | 49 |
| 188_F_CB2YGANXX_TTAGGC_L001_R1.fastq.gz | 39,450,243 | 0 | 50-100 | 46 |
| 190_F_CB2YGANXX_TGACCA_L001_R1.fastq.gz | 3.8e+07 | 0 | 50-100 | 47 |
| 192_F_CB2YGANXX_ACAGTG_L001_R1.fastq.gz | 37,549,038 | 0 | 50-100 | 49 |
| 194_F_CB2YGANXX_GCCAAT_L001_R1.fastq.gz | 39,374,822 | 0 | 50-100 | 46 |
Library Sizes ranged between 37,549,038 and 44,761,237 reads.
Read totals for each library. Duplicated reads are conventionally an high overestimate at this point.
Summary of FastQC flags for each parameter
Heatmap showing mean base qualities for each library
Heatmap showing mean sequence qualities for each library
Heatmap of summed base distributions along each read
GC Content Heatmap normalised to theoretical GC content in the Hsapiens Transcriptome
GC Content Distributions for all reads showing theoretical GC content from the Hsapiens Transcriptome
Total overrepresented sequences for each library
| Sequence | Total | Present In | Overall Percentage | Max_Percentage | Possible_Source |
|---|---|---|---|---|---|
| CCCCTCCTTAGGCAACCTGGTGGTCCCCCGCTCCCGGGAGGTCACCATAT | 2,470,257 | 6 | 1.015% | 1.32% | No Hit |
| CCCTCCTTAGGCAACCTGGTGGTCCCCCGCTCCCGGGAGGTCACCATATT | 2,097,210 | 6 | 0.862% | 1.05% | No Hit |
| ACCAGGTCGATGCGTGGAGTGGACGGAGCAAGCTCCTATTCCAACTCCTA | 1,493,122 | 6 | 0.614% | 1.10% | No Hit |
| GGTCGATGCGTGGAGTGGACGGAGCAAGCTCCTATTCCAACTCCTAGTTC | 1,484,980 | 6 | 0.610% | 1.06% | No Hit |
| CTCCTTAGGCAACCTGGTGGTCCCCCGCTCCCGGGAGGTCACCATATTGA | 1,406,152 | 6 | 0.578% | 0.71% | No Hit |
| GTCGATGCGTGGAGTGGACGGAGCAAGCTCCTATTCCAACTCCTAGTTCC | 1,351,944 | 6 | 0.556% | 0.93% | No Hit |
| CCTTAGGCAACCTGGTGGTCCCCCGCTCCCGGGAGGTCACCATATTGATG | 1,324,620 | 6 | 0.544% | 0.73% | No Hit |
| CAGGTCGATGCGTGGAGTGGACGGAGCAAGCTCCTATTCCAACTCCTAGT | 1,277,741 | 6 | 0.525% | 0.88% | No Hit |
| GGCAGACGTTCGAATGGGTCGTCGCCGCCACGGAGGGCGTGCGATCGGCC | 1,272,490 | 4 | 0.523% | 1.89% | No Hit |
| CCTCCTTAGGCAACCTGGTGGTCCCCCGCTCCCGGGAGGTCACCATATTG | 1,238,855 | 6 | 0.509% | 0.59% | No Hit |
| CTGGAGTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAATGGACCTTG | 1,119,146 | 5 | 0.460% | 1.03% | No Hit |
| CCCCACTACCACAAATTATGCAGTCGAGTTTCCCGCATTTGGGGAAATCG | 1,104,636 | 5 | 0.454% | 1.15% | No Hit |
| CCCACTACCACAAATTATGCAGTCGAGTTTCCCGCATTTGGGGAAATCGC | 830,712 | 5 | 0.341% | 0.87% | No Hit |
| GTCGGCATGTATTAGCTCTAGAATTACCACAGTTATCCAAGTAGGAGAGG | 825,035 | 4 | 0.339% | 0.95% | No Hit |
| CTGTATTGTTATTTTTCGTCACTACCTCCCCGGGTCGGGAGTGGGTAATT | 808,449 | 4 | 0.332% | 1.00% | No Hit |
| CACCCCTCCTTAGGCAACCTGGTGGTCCCCCGCTCCCGGGAGGTCACCAT | 782,676 | 6 | 0.322% | 0.49% | No Hit |
| GTCTGGAGTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAATGGACCT | 761,221 | 5 | 0.313% | 0.72% | No Hit |
| CTCCGTTTCCGACCTGGGCCGGTTCACCCCTCCTTAGGCAACCTGGTGGT | 664,017 | 6 | 0.273% | 0.44% | No Hit |
| GTCCTGTATTGTTATTTTTCGTCACTACCTCCCCGGGTCGGGAGTGGGTA | 579,447 | 4 | 0.238% | 0.63% | No Hit |
| GCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTTCTCAGGCTCCCTCTCCG | 460,798 | 3 | 0.189% | 0.58% | No Hit |
| CCAGGTCGATGCGTGGAGTGGACGGAGCAAGCTCCTATTCCAACTCCTAG | 460,607 | 4 | 0.189% | 0.40% | No Hit |
| GTCCCCCACTACCACAAATTATGCAGTCGAGTTTCCCGCATTTGGGGAAA | 450,869 | 4 | 0.185% | 0.44% | No Hit |
| CTTAGGCAACCTGGTGGTCCCCCGCTCCCGGGAGGTCACCATATTGATGC | 413,718 | 6 | 0.170% | 0.24% | No Hit |
| CTCTTAATCATGGCCTCAGTTCCGAAAACCAACAAAATAGAACCGCGGTC | 406,183 | 3 | 0.167% | 0.52% | No Hit |
| GCTCCGTTTCCGACCTGGGCCGGTTCACCCCTCCTTAGGCAACCTGGTGG | 386,278 | 6 | 0.159% | 0.22% | No Hit |
| CCCGTCGGCATGTATTAGCTCTAGAATTACCACAGTTATCCAAGTAGGAG | 324,668 | 2 | 0.133% | 0.45% | No Hit |
| TCCTTAGGCAACCTGGTGGTCCCCCGCTCCCGGGAGGTCACCATATTGAT | 281,331 | 5 | 0.116% | 0.17% | No Hit |
| CCCGAGGTTATCTAGAGTCACCAAAGCCGCCGGCGCCCGACCCCCGGCCG | 267,579 | 2 | 0.110% | 0.49% | No Hit |
| CTTCCGTCAATTCCTTTAAGTTTCAGCTTTGCAACCATACTCCCCCCGGA | 265,377 | 2 | 0.109% | 0.40% | No Hit |
| CTCCCATCCAAGTACTAACCAGGCCCGACCCTGCTTAGCTTCCGAGATCA | 263,103 | 4 | 0.108% | 0.21% | No Hit |
Universal Adapter Content
## The Kmer_Content module was missing from 179_F_CB2YGANXX_ATCACG_L001_R1_fastqc.zip
## The Kmer_Content module was missing from 187_F_CB2YGANXX_CGATGT_L001_R1_fastqc.zip
## The Kmer_Content module was missing from 188_F_CB2YGANXX_TTAGGC_L001_R1_fastqc.zip
## The Kmer_Content module was missing from 190_F_CB2YGANXX_TGACCA_L001_R1_fastqc.zip
## The Kmer_Content module was missing from 192_F_CB2YGANXX_ACAGTG_L001_R1_fastqc.zip
## The Kmer_Content module was missing from 194_F_CB2YGANXX_GCCAAT_L001_R1_fastqc.zip
## No Kmers were detected by FastQC